OxyDB | Oxytricha Genome Database Wiki

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Recent Papers

Wang M, Hu T, Wang S, Tong Z, Wei Q, Fan X (2025) Morphology and molecular phylogeny of a new hypotrichous ciliate, Sterkiella zhangi n. sp. (Ciliophora, Oxytrichidae). European journal of protistology 98:126141
PUBMED:40073699

Villano DJ, Prahlad M, Singhal A, Sanbonmatsu KY, Landweber LF (2025) Widespread 3D genome reorganization precedes programmed DNA rearrangement in . bioRxiv : the preprint server for biology :
PUBMED:39803579

Bétermier M, Klobutcher LA, Orias E (2023) Programmed chromosome fragmentation in ciliated protozoa: multiple means to chromosome ends. Microbiology and molecular biology reviews : MMBR :e0018422
PUBMED:38009915

BLAST Server at OxyDB

Click here for information about the BLAST process and help with advanced options.

BLAST Program

blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database

Database

Oxytricha2020 Amino Acide (protein)
Oxytricha2020 CDS (nucleotide)
Oxytricha2020 Assembly (nucleotide)
Oxytricha Micronuclear (nucleotide)
Oxytricha Amino Acid (protein)
Oxytricha CDS (nucleotide)
Oxytricha Assembly (nucleotide)

Query Sequence Enter sequence below in FASTA format

Or load it from disk:
Set subsequence from to

Advanced Options

Filter for low copmlexity regions

Perform ungapped alignment

Expect
Matrix
Alignments

Query Genetic Codes (blastx only)
Database Genetic Codes (tblast[nx] only)

Other advanced options:

Wiki Links

External Links

Ciliate Genomics Consortium

Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The Ciliate.org project at Bradley University is supported by a grant from the National Center for Research Resources, part of the US National Institutes of Health.