Identifiers and Description
Gene Model Identifier
Contig17825.0.g106Standard Name
UPF1Aliases
Contig17825_0_g106Description
RNA helicase (UPF2 interacting domain)Genome Browser
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Genome Browser (Micronucleus)
Micronuclear Genome Browser
Gene Ontology Annotations
Cellular Component
- cytoplasm (IEA) | GO:0005737
- intracellular (IEA) | GO:0005622
Molecular Function
- hydrolase activity (IEA) | GO:0016787
- ATP-dependent helicase activity (IEA) | GO:0008026
- zinc ion binding (IEA) | GO:0008270
- GTP binding (IEA) | GO:0005525
- ATP binding (IEA) | GO:0005524
- helicase activity (IEA) | GO:0004386
- DNA binding (IEA) | GO:0003677
- nucleic acid binding (IEA) | GO:0003676
Biological Process
- nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (IEA) | GO:0000184
- SRP-dependent cotranslational protein targeting to membrane (IEA) | GO:0006614
- transport (IEA) | GO:0006810
Domains
- ( pfam09416 ) RNA helicase (UPF2 interacting domain)
- ( pfam13087 ) AAA domain
- ( pfam13086 ) AAA domain
- ( pfam13245 ) Part of AAA domain
- ( pfam13604 ) AAA domain
- ( pfam04851 ) Type III restriction enzyme, res subunit
- ( pfam09848 ) Uncharacterized conserved protein (DUF2075)
- ( pfam05127 ) Helicase
- ( pfam01443 ) Viral (Superfamily 1) RNA helicase
- ( pfam05970 ) PIF1-like helicase
- ( pfam13191 ) AAA ATPase domain
- ( pfam00448 ) SRP54-type protein, GTPase domain
- ( pfam02562 ) PhoH-like protein
- ( pfam13401 ) AAA domain
- ( pfam00270 ) DEAD/DEAH box helicase
- ( pfam08235 ) LNS2 (Lipin/Ned1/Smp2)
- ( pfam00437 ) Type II/IV secretion system protein
- ( pfam13238 ) AAA domain
- ( pfam00004 ) ATPase family associated with various cellular activities (AAA)
Gene Expression Profile
No expression data available at this time.
Homologs
Source Identifier Score Description T. thermophila TTHERM_00726300 9.997093137033517e-262 phage head-tail adaptor, putat
ive family protein
SGD YMR080C 9.997093137033517e-262 NAM7 SGDID:S000004685, Chr XII
I from 429627-426712, Gen...
General Information
No Data fetched for General Information
Associated Literature
No Data fetched for Associated Literature
Sequences
>Contig17825.0.g106(coding)
ATGCAATCATATTAAGGAGCTAGACCGACCTTCATGAATAGTGGCTAACCCAAGAAAAAT
ACAGATAGTAATAATGCTAATTTGTAAAAATAGCAATAAAACCAAGCTTAAAACTAACCA
AACCCTAATAAGAGCAACTACAGATACGATAAGGAAGAAGAAAAAGTAGAGAATTGGAGA
AATATGGGTGGATCAGGCACTAATAATGCCTAAACTAGCGATAGAAGTGGATCAAGCAAT
GATGCCACTAGTAATATTTATGTGAGTGGTGTAAGTGGTGCTACCTAAGTCTCAACCTCA
GTCAATCAGACGAACTAGAAAGGTGGGGTAGGTGCTAGTGATTTCGGCAATAAAAATGGC
TATAACAACAACTCAGCTCAGAAGAAGCAAGGAGGAGCTTCGAGTTTTGATGTGTTTTCT
GGTAAAAAGGGGGCAGCTTTTCAAAGCGACGACAGCAGCAGTAGCAGCGAAGAGGAGGAG
GAAGATTTTGGGGATGACGATGGACGCATGAGACGCATGGATGACTTGAATAATAGCAGT
TCACACTTCGATGCGAGGTCTGAAATCTCTGAGTCAGTAGGCAGTGTGGACCTAGAAGCA
GTCGAACCTTATGACTTCAATAATTTACCACAACATGCTTGTGCATATTGTGGAATACAT
GAACCAGAGTGTGTGGTTAAATGCTCAATTAAAGAGTGCAATAGATGGTTCTGTAACGGC
AAGGGTATTAACGAGTATGGAAGTCACATAATGCTTCATTAGGTGAAGTCTAGACACAAA
GAAATCTCTCTCCATCCCGATTCCCCTCTCAAAGACACAGTAATTGAATGCTACAATTGT
TCAAGCAAGAACATTTTCCTACTAGGTTTCGTCTCCGCAAAACAAGAAGCAGTCATTATT
CTTCTCTGCAGAGAGCCCTGTCTCAGTCAACTTTCCGTCAAGGACAGCAAGTGGGATATG
GAAAACTGGCAGGCATTAATCGAGAACAAAGCCATATTGAGTTGGTTAGTCAAGTTTCCA
TCAGATTTTGAGTTCAAACGCTCAAGGAAAATTACTGCTTCGTAGATCAACAAACTTGAA
GAGCTCTGGAAAGAGAAGCCAACTGCCTAAGTAGGGGATTTGAATGTCATTTAATAGGAG
AAAGCAATGCAACCAGTCTTATTGAGATACAAAGACCCCAAGCAGTACAAGGATATATTC
GAACCCTTGATTAAACTGGAGGCTGACTACGATAAAAGCTTCAAGGAATCGCAAACTCAG
AGAAATATCAGAGTCAGATTTGACTACAGCTTAAACAAGAAGAAGCAAGCATTTTTCATA
TTCCCAAATGAAGATAACATCAGACTAGTCCCTGGAGATGAACTGAAGCTAGTTTATGAG
TATGAAGGACAGCCTAAATGGCAGAGTAGAGGTCACATCGTAAGAATAGTGAATGAAGAG
ATATGTCTTGAATTGAAAAATCCAAAGGGATGCCCCAATGATCCTGACATCAGATTTACA
ATTGAGTTTATTTGGAAATCAACTTCTTTTGATAGAATGAGATTAGCTTTGAAGATATTT
ATGAGAGATGAGCAGTCACTTTCAAACTACATTTTCTACAAGTTGCTTGGTTATAACACA
CAAGAGCAGTTCATAAAGACCAACATCCCAAAGCATCTATCAGTGCCTGGCTTGCCAGAA
TTAAATCACTTCCAAATGAATGCAGTTAAGAAGGCTTTAATCACACCACTATGTTTGATT
CAAGGGCCTCCAGGGACTGGTAAAACAGTCACTTCGACGACATTAGTTACACATTTAGTT
AAGCAGAAGATGGGGAAAGTCTTAGTGTGTGCTCCATCAAATATTGCTGTAGACTAATTG
ACAGATAAAATTAATAGTACTGGTATTAAAGTAGTCAGAATGTGTGCAAGGTCAAGAGAA
TCTGTAAGCTCAAACGTGGATTATTTATCACTGCATGAACAAATAAAATACCTGAGTCAC
GGTCCATTTAAACTTATGTAAGAGTTAATTCTAAAGAAAGAAGAGTAAAATGAACTTACG
GAGAAGGAAGAAAGATAACTCAAGGAATTAAAGAGACAGGCTGAAGATGAAATATTGAAA
AATGCTGAGGTTATTTGTACTACTTGTGTTGCTGCATTTGATAGAAGATTAAGAAACTTC
AAATTCTCTCAGGTACTTATTGATGAAGCTACATAGGCCACAGAACCAGAAACTTTAATT
CCAATCTTAAGAGGAGCCAAGCATGTAATTTTAGTCGGAGATCACTGCTAACTGGGCCCA
GTTATCATGTGCAAGAAAGCAGCCAAAGCAGGTTTAAATCAAAGTCTCTTCGAAAGATTA
GTATGTTTAGGAATTAGGCCAATTAGATTGTAAGTTCAATACAGAATGCATCCAGTGCTT
AGTGCTTTTCCATCTATGACTTTTTATGAGGGTTCACTTTAAAACGGTATCTCAAAGCAA
GATAGAATTCTCTCAGACTTCAAGTTTTAATGGCCTGCCAGTGAGAAACCCATGATGTTC
TATCATTCAATCAGCAATGAAGAAATTTCAGCATCTGGTACTTCATTCTTGAACAGATAA
GAAGCTTATAACGTAGAGGCACTTGTTACTTAATTCTTGAAATTTGACTTGAAACCTGAA
TAGATTGGTATCATCACACCTTACGAAGGCCAAAAAGCCTTCATCACGAGTTATATGCAG
AGATCAGGTTAACTTGACCCTTCTCTATATAAAGAAATTGAAGTTGCCTCAGTCGATAGT
TTCCAAGGCAGAGAGAAAGACTTCATTTTACTCTCTTGTGTCAGAAGTAATGAAGCATCA
GGCATTGGTTTCCTTAATGATCCCAGAAGATTGAACGTCGCTTTAACTAGAGCAAAGTAT
GGTTTAGTAATCTTCGGAAACGCAAAAGTACTCTCAAAGCATGACTTGTGGAACAATCTC
CTCAACGAATTCAAAAATCAAGGTTGCCTAGTCGAAGGACCTAATATTTTCAACCTTAAA
CCTTGTGTAATTGTACTGAGAAGACCAGTAAAGTACAATCCAGATAAAAGAGACTTCGTG
TTGACAGAAACAGCCTTGAATAACTTTGAGAAATCTTAATAAGCTGCAGTCGGTCACTCA
ACTCCAAGCAGTATCAGAGATGAATTCGATACCAGAAGTGAAATGAGTAAAACAGAAAGC
CAGATTTCATATGGAAACAGAGTGAGTCAGTTTGGATTCACAGATATGTTCGGTTTAAGC
AAATCTTCATAGCCAAGCCATCCCATCACCACAAACACCACCTCACAACTAAAAACTTCA
AATTAAAAGGCTCAAGATAAAAGAGCTAACACATCTTCAAATGCATCAGGACAGATTAAG
TAGTAAGAGTCAATGAGTTCAAAGCAAGGTCGCATGCTCGGAGCAGATAATGATCTGAGC
AACGACTAGTTCTTGAGCAGCATGAAGGGCGGTAAATAATGA>Contig17825.0.g106(protein)
MQSYQGARPTFMNSGQPKKNTDSNNANLQKQQQNQAQNQPNPNKSNYRYDKEEEKVENWR
NMGGSGTNNAQTSDRSGSSNDATSNIYVSGVSGATQVSTSVNQTNQKGGVGASDFGNKNG
YNNNSAQKKQGGASSFDVFSGKKGAAFQSDDSSSSSEEEEEDFGDDDGRMRRMDDLNNSS
SHFDARSEISESVGSVDLEAVEPYDFNNLPQHACAYCGIHEPECVVKCSIKECNRWFCNG
KGINEYGSHIMLHQVKSRHKEISLHPDSPLKDTVIECYNCSSKNIFLLGFVSAKQEAVII
LLCREPCLSQLSVKDSKWDMENWQALIENKAILSWLVKFPSDFEFKRSRKITASQINKLE
ELWKEKPTAQVGDLNVIQQEKAMQPVLLRYKDPKQYKDIFEPLIKLEADYDKSFKESQTQ
RNIRVRFDYSLNKKKQAFFIFPNEDNIRLVPGDELKLVYEYEGQPKWQSRGHIVRIVNEE
ICLELKNPKGCPNDPDIRFTIEFIWKSTSFDRMRLALKIFMRDEQSLSNYIFYKLLGYNT
QEQFIKTNIPKHLSVPGLPELNHFQMNAVKKALITPLCLIQGPPGTGKTVTSTTLVTHLV
KQKMGKVLVCAPSNIAVDQLTDKINSTGIKVVRMCARSRESVSSNVDYLSLHEQIKYLSH
GPFKLMQELILKKEEQNELTEKEERQLKELKRQAEDEILKNAEVICTTCVAAFDRRLRNF
KFSQVLIDEATQATEPETLIPILRGAKHVILVGDHCQLGPVIMCKKAAKAGLNQSLFERL
VCLGIRPIRLQVQYRMHPVLSAFPSMTFYEGSLQNGISKQDRILSDFKFQWPASEKPMMF
YHSISNEEISASGTSFLNRQEAYNVEALVTQFLKFDLKPEQIGIITPYEGQKAFITSYMQ
RSGQLDPSLYKEIEVASVDSFQGREKDFILLSCVRSNEASGIGFLNDPRRLNVALTRAKY
GLVIFGNAKVLSKHDLWNNLLNEFKNQGCLVEGPNIFNLKPCVIVLRRPVKYNPDKRDFV
LTETALNNFEKSQQAAVGHSTPSSIRDEFDTRSEMSKTESQISYGNRVSQFGFTDMFGLS
KSSQPSHPITTNTTSQLKTSNQKAQDKRANTSSNASGQIKQQESMSSKQGRMLGADNDLS
NDQFLSSMKGGKQ