Identifiers and Description

Gene Model Identifier

Contig17825.0.g106

Standard Name

UPF1

Aliases

Contig17825_0_g106

Description

RNA helicase (UPF2 interacting domain)

Genome Browser

Genome Browser (Micronucleus)

Micronuclear Genome Browser

Gene Ontology Annotations

Cellular Component

• cytoplasm (IEA) | GO:0005737
• intracellular (IEA) | GO:0005622

Molecular Function

• helicase activity (IEA) | GO:0004386
• DNA binding (IEA) | GO:0003677
• nucleic acid binding (IEA) | GO:0003676
• hydrolase activity (IEA) | GO:0016787
• ATP-dependent helicase activity (IEA) | GO:0008026
• zinc ion binding (IEA) | GO:0008270
• GTP binding (IEA) | GO:0005525
• ATP binding (IEA) | GO:0005524

Biological Process

• transport (IEA) | GO:0006810
• nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (IEA) | GO:0000184
• SRP-dependent cotranslational protein targeting to membrane (IEA) | GO:0006614

Domains

• ( pfam09416 ) RNA helicase (UPF2 interacting domain)
• ( pfam13087 ) AAA domain
• ( pfam13086 ) AAA domain
• ( pfam13245 ) Part of AAA domain
• ( pfam13604 ) AAA domain
• ( pfam04851 ) Type III restriction enzyme, res subunit
• ( pfam09848 ) Uncharacterized conserved protein (DUF2075)
• ( pfam05127 ) Helicase
• ( pfam01443 ) Viral (Superfamily 1) RNA helicase
• ( pfam05970 ) PIF1-like helicase
• ( pfam13191 ) AAA ATPase domain
• ( pfam00448 ) SRP54-type protein, GTPase domain
• ( pfam02562 ) PhoH-like protein
• ( pfam13401 ) AAA domain
• ( pfam00270 ) DEAD/DEAH box helicase
• ( pfam08235 ) LNS2 (Lipin/Ned1/Smp2)
• ( pfam00437 ) Type II/IV secretion system protein
• ( pfam13238 ) AAA domain
• ( pfam00004 ) ATPase family associated with various cellular activities (AAA)

Gene Expression Profile

Homologs

Source	Identifier	Score	Description
T. thermophila	TTHERM_00726300	9.997093137033517e-262	phage head-tail adaptor, putat ive family protein
SGD	YMR080C	9.997093137033517e-262	NAM7 SGDID:S000004685, Chr XII I from 429627-426712, Gen...

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>Contig17825.0.g106(coding)
ATGCAATCATATTAAGGAGCTAGACCGACCTTCATGAATAGTGGCTAACCCAAGAAAAAT
ACAGATAGTAATAATGCTAATTTGTAAAAATAGCAATAAAACCAAGCTTAAAACTAACCA
AACCCTAATAAGAGCAACTACAGATACGATAAGGAAGAAGAAAAAGTAGAGAATTGGAGA
AATATGGGTGGATCAGGCACTAATAATGCCTAAACTAGCGATAGAAGTGGATCAAGCAAT
GATGCCACTAGTAATATTTATGTGAGTGGTGTAAGTGGTGCTACCTAAGTCTCAACCTCA
GTCAATCAGACGAACTAGAAAGGTGGGGTAGGTGCTAGTGATTTCGGCAATAAAAATGGC
TATAACAACAACTCAGCTCAGAAGAAGCAAGGAGGAGCTTCGAGTTTTGATGTGTTTTCT
GGTAAAAAGGGGGCAGCTTTTCAAAGCGACGACAGCAGCAGTAGCAGCGAAGAGGAGGAG
GAAGATTTTGGGGATGACGATGGACGCATGAGACGCATGGATGACTTGAATAATAGCAGT
TCACACTTCGATGCGAGGTCTGAAATCTCTGAGTCAGTAGGCAGTGTGGACCTAGAAGCA
GTCGAACCTTATGACTTCAATAATTTACCACAACATGCTTGTGCATATTGTGGAATACAT
GAACCAGAGTGTGTGGTTAAATGCTCAATTAAAGAGTGCAATAGATGGTTCTGTAACGGC
AAGGGTATTAACGAGTATGGAAGTCACATAATGCTTCATTAGGTGAAGTCTAGACACAAA
GAAATCTCTCTCCATCCCGATTCCCCTCTCAAAGACACAGTAATTGAATGCTACAATTGT
TCAAGCAAGAACATTTTCCTACTAGGTTTCGTCTCCGCAAAACAAGAAGCAGTCATTATT
CTTCTCTGCAGAGAGCCCTGTCTCAGTCAACTTTCCGTCAAGGACAGCAAGTGGGATATG
GAAAACTGGCAGGCATTAATCGAGAACAAAGCCATATTGAGTTGGTTAGTCAAGTTTCCA
TCAGATTTTGAGTTCAAACGCTCAAGGAAAATTACTGCTTCGTAGATCAACAAACTTGAA
GAGCTCTGGAAAGAGAAGCCAACTGCCTAAGTAGGGGATTTGAATGTCATTTAATAGGAG
AAAGCAATGCAACCAGTCTTATTGAGATACAAAGACCCCAAGCAGTACAAGGATATATTC
GAACCCTTGATTAAACTGGAGGCTGACTACGATAAAAGCTTCAAGGAATCGCAAACTCAG
AGAAATATCAGAGTCAGATTTGACTACAGCTTAAACAAGAAGAAGCAAGCATTTTTCATA
TTCCCAAATGAAGATAACATCAGACTAGTCCCTGGAGATGAACTGAAGCTAGTTTATGAG
TATGAAGGACAGCCTAAATGGCAGAGTAGAGGTCACATCGTAAGAATAGTGAATGAAGAG
ATATGTCTTGAATTGAAAAATCCAAAGGGATGCCCCAATGATCCTGACATCAGATTTACA
ATTGAGTTTATTTGGAAATCAACTTCTTTTGATAGAATGAGATTAGCTTTGAAGATATTT
ATGAGAGATGAGCAGTCACTTTCAAACTACATTTTCTACAAGTTGCTTGGTTATAACACA
CAAGAGCAGTTCATAAAGACCAACATCCCAAAGCATCTATCAGTGCCTGGCTTGCCAGAA
TTAAATCACTTCCAAATGAATGCAGTTAAGAAGGCTTTAATCACACCACTATGTTTGATT
CAAGGGCCTCCAGGGACTGGTAAAACAGTCACTTCGACGACATTAGTTACACATTTAGTT
AAGCAGAAGATGGGGAAAGTCTTAGTGTGTGCTCCATCAAATATTGCTGTAGACTAATTG
ACAGATAAAATTAATAGTACTGGTATTAAAGTAGTCAGAATGTGTGCAAGGTCAAGAGAA
TCTGTAAGCTCAAACGTGGATTATTTATCACTGCATGAACAAATAAAATACCTGAGTCAC
GGTCCATTTAAACTTATGTAAGAGTTAATTCTAAAGAAAGAAGAGTAAAATGAACTTACG
GAGAAGGAAGAAAGATAACTCAAGGAATTAAAGAGACAGGCTGAAGATGAAATATTGAAA
AATGCTGAGGTTATTTGTACTACTTGTGTTGCTGCATTTGATAGAAGATTAAGAAACTTC
AAATTCTCTCAGGTACTTATTGATGAAGCTACATAGGCCACAGAACCAGAAACTTTAATT
CCAATCTTAAGAGGAGCCAAGCATGTAATTTTAGTCGGAGATCACTGCTAACTGGGCCCA
GTTATCATGTGCAAGAAAGCAGCCAAAGCAGGTTTAAATCAAAGTCTCTTCGAAAGATTA
GTATGTTTAGGAATTAGGCCAATTAGATTGTAAGTTCAATACAGAATGCATCCAGTGCTT
AGTGCTTTTCCATCTATGACTTTTTATGAGGGTTCACTTTAAAACGGTATCTCAAAGCAA
GATAGAATTCTCTCAGACTTCAAGTTTTAATGGCCTGCCAGTGAGAAACCCATGATGTTC
TATCATTCAATCAGCAATGAAGAAATTTCAGCATCTGGTACTTCATTCTTGAACAGATAA
GAAGCTTATAACGTAGAGGCACTTGTTACTTAATTCTTGAAATTTGACTTGAAACCTGAA
TAGATTGGTATCATCACACCTTACGAAGGCCAAAAAGCCTTCATCACGAGTTATATGCAG
AGATCAGGTTAACTTGACCCTTCTCTATATAAAGAAATTGAAGTTGCCTCAGTCGATAGT
TTCCAAGGCAGAGAGAAAGACTTCATTTTACTCTCTTGTGTCAGAAGTAATGAAGCATCA
GGCATTGGTTTCCTTAATGATCCCAGAAGATTGAACGTCGCTTTAACTAGAGCAAAGTAT
GGTTTAGTAATCTTCGGAAACGCAAAAGTACTCTCAAAGCATGACTTGTGGAACAATCTC
CTCAACGAATTCAAAAATCAAGGTTGCCTAGTCGAAGGACCTAATATTTTCAACCTTAAA
CCTTGTGTAATTGTACTGAGAAGACCAGTAAAGTACAATCCAGATAAAAGAGACTTCGTG
TTGACAGAAACAGCCTTGAATAACTTTGAGAAATCTTAATAAGCTGCAGTCGGTCACTCA
ACTCCAAGCAGTATCAGAGATGAATTCGATACCAGAAGTGAAATGAGTAAAACAGAAAGC
CAGATTTCATATGGAAACAGAGTGAGTCAGTTTGGATTCACAGATATGTTCGGTTTAAGC
AAATCTTCATAGCCAAGCCATCCCATCACCACAAACACCACCTCACAACTAAAAACTTCA
AATTAAAAGGCTCAAGATAAAAGAGCTAACACATCTTCAAATGCATCAGGACAGATTAAG
TAGTAAGAGTCAATGAGTTCAAAGCAAGGTCGCATGCTCGGAGCAGATAATGATCTGAGC
AACGACTAGTTCTTGAGCAGCATGAAGGGCGGTAAATAATGA

>Contig17825.0.g106(protein)
MQSYQGARPTFMNSGQPKKNTDSNNANLQKQQQNQAQNQPNPNKSNYRYDKEEEKVENWR
NMGGSGTNNAQTSDRSGSSNDATSNIYVSGVSGATQVSTSVNQTNQKGGVGASDFGNKNG
YNNNSAQKKQGGASSFDVFSGKKGAAFQSDDSSSSSEEEEEDFGDDDGRMRRMDDLNNSS
SHFDARSEISESVGSVDLEAVEPYDFNNLPQHACAYCGIHEPECVVKCSIKECNRWFCNG
KGINEYGSHIMLHQVKSRHKEISLHPDSPLKDTVIECYNCSSKNIFLLGFVSAKQEAVII
LLCREPCLSQLSVKDSKWDMENWQALIENKAILSWLVKFPSDFEFKRSRKITASQINKLE
ELWKEKPTAQVGDLNVIQQEKAMQPVLLRYKDPKQYKDIFEPLIKLEADYDKSFKESQTQ
RNIRVRFDYSLNKKKQAFFIFPNEDNIRLVPGDELKLVYEYEGQPKWQSRGHIVRIVNEE
ICLELKNPKGCPNDPDIRFTIEFIWKSTSFDRMRLALKIFMRDEQSLSNYIFYKLLGYNT
QEQFIKTNIPKHLSVPGLPELNHFQMNAVKKALITPLCLIQGPPGTGKTVTSTTLVTHLV
KQKMGKVLVCAPSNIAVDQLTDKINSTGIKVVRMCARSRESVSSNVDYLSLHEQIKYLSH
GPFKLMQELILKKEEQNELTEKEERQLKELKRQAEDEILKNAEVICTTCVAAFDRRLRNF
KFSQVLIDEATQATEPETLIPILRGAKHVILVGDHCQLGPVIMCKKAAKAGLNQSLFERL
VCLGIRPIRLQVQYRMHPVLSAFPSMTFYEGSLQNGISKQDRILSDFKFQWPASEKPMMF
YHSISNEEISASGTSFLNRQEAYNVEALVTQFLKFDLKPEQIGIITPYEGQKAFITSYMQ
RSGQLDPSLYKEIEVASVDSFQGREKDFILLSCVRSNEASGIGFLNDPRRLNVALTRAKY
GLVIFGNAKVLSKHDLWNNLLNEFKNQGCLVEGPNIFNLKPCVIVLRRPVKYNPDKRDFV
LTETALNNFEKSQQAAVGHSTPSSIRDEFDTRSEMSKTESQISYGNRVSQFGFTDMFGLS
KSSQPSHPITTNTTSQLKTSNQKAQDKRANTSSNASGQIKQQESMSSKQGRMLGADNDLS
NDQFLSSMKGGKQ