Identifiers and Description

Gene Model Identifier

Contig2682.0.g45

Standard Name

RFC1a

Aliases

Contig2682_0_g45

Description

Replication factor RFC1 C terminal domain

Genome Browser

Genome Browser (Micronucleus)

Micronuclear Genome Browser

Gene Ontology Annotations

Cellular Component

• DNA replication factor C complex (IEA) | GO:0005663
• integral component of membrane (IEA) | GO:0016021
• intracellular (IEA) | GO:0005622

Molecular Function

• four-way junction helicase activity (IEA) | GO:0009378
• transmembrane transporter activity (IEA) | GO:0022857
• ATP binding (IEA) | GO:0005524
• DNA clamp loader activity (IEA) | GO:0003689
• ATPase activity (IEA) | GO:0016887

Biological Process

• DNA repair (IEA) | GO:0006281
• transmembrane transport (IEA) | GO:0055085
• DNA recombination (IEA) | GO:0006310
• DNA replication (IEA) | GO:0006260

Domains

• ( pfam08519 ) Replication factor RFC1 C terminal domain
• ( pfam00004 ) ATPase family associated with various cellular activities (AAA)
• ( pfam00533 ) BRCA1 C Terminus (BRCT) domain
• ( pfam05496 ) Holliday junction DNA helicase ruvB N-terminus
• ( pfam13207 ) AAA domain
• ( pfam13401 ) AAA domain
• ( pfam13191 ) AAA ATPase domain
• ( pfam07728 ) AAA domain (dynein-related subfamily)
• ( pfam13238 ) AAA domain
• ( pfam00083 ) Sugar (and other) transporter

Gene Expression Profile

Homologs

Source	Identifier	Score	Description
T. thermophila	TTHERM_00939110	9.997217559668329e-127	BRCA1 C Terminus (BRCT) domain
SGD	YOR217W	2.0001503375893664e-79	RFC1 SGDID:S000005743, Chr XV from 749301-751886, Genom...

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>Contig2682.0.g45(coding)
ATGATCCGCGATTTCTTTAAACAAACATCAATCAAGACCTCCGATTCAAAGGGGAAAGTA
GTCCAACCTTCTCCCGTCGCATCAAAAACACAAACAAAGAGCAAAGAACCCAACACAAGA
TTTGAGAGAAGCGAGAAACGTGAAAAATCTAAGTCTAAGCAGTCCCAGGCTACAGAAGAT
AAGAGTTCTTAATAAAATTAGAAGTCTGCTAAAAAAGAGCTCATCAAGTCAACAAATTCA
AGGAGCAAGGTTCAATCTCCCGCAAAATCTCCAATGACTCGCACTCCCATTAAAAGTTAA
CCAAAAAAAGAGTAACAAACCTACGAAGACTCATTGGAAGACGCAGAGGAGGAAGAAGTG
AAAGTTAGTACTAGATCTGCCGCCAAAAATCAAACTTTAGCTCAAAACTCAAAAGCTTAA
AAATCTCATGGAGATAAAAATACAGGTAATTCTTAGAGATCTTCCCACAAAAATGAGTCA
AACAATAGAAACGATTCTCAATCAAGAAGCAAGACCCCTATTAAGAATTAATAGCAATCA
AACATGCAAGTACCTGAGAATAAAGTAAATACTAGAAATAGTGCTAAAGCTACTCCAAAT
AAAAACTAAATTCAGTCCTAAGCAAACAATATGATTCAAAAGACCAAGCATGCTCCCCCT
TCCCCAGCTAAGAATTCCCAAAAATCTCAAAATGTTGTAAATTAGAACACTCAGCAAAAG
TCAAAGCAGCCCCAAGATACTTTCGCAGACGTGGAGATGAAAGATGAGGATGATAATTAA
GAAACTATCTCACCTTAAATTCGTTCCTCACAAAGAAATACCAGACAAAGTTAATCGAGA
GGAGCTTCTTAAAACACAAATATTCGCAGTGGTTAAAGCTAAAATGCTCAGAATGTTGCC
AATTAAAATAATCATAAATCAGATGTTGTAATGAAGTAGTAAGTTAGCGAGGATGAGGAC
GAAGATTTAGGAGCTATGATGAGAAATAGAAGAAGAGGACCTGCTGCTGTAGTTGAGGAT
GAAGATGACGATCAGGAAACTTAAATCCAAGCAAGAAACAGGCAATCGAAGAAAAGGAAC
ACAATTCTTGACGATGAAGATGAAGAGGATGTTAGAAGAACTCAGACAAATAAAAGATAA
AAAGTTACTGAAAATGAAGAGGAAGAGAAAGATGAGAAATAGCAACAGTAATCTAAATAG
AGCTAAGCTGATTTGTATTTAGAAAAGATGGCTTATTCAAAGTCATAATAGCAGCTCTCT
CAATCATCAGCTAAACAAAGTAAAAATATGCAAGCATCAGGAATGAGCCCTAGATTGGAT
AAACTTAGCATTAATGATTCTAACGCAGCTAAAAGTGGCAGCAGATAAATGCCTCAAACT
ATGAGTTAAAAGTCCAATGGCAATGCTAGAAAGTAGCAAAAACCTGCTAGTCAAGATGAA
GACATGGACTTGGATCTTGATGATTTAAGAGATGCAATTGAGGACAAGCCCTTGGAAGGT
TTAACTTTTGTGATATCAGGTGAATTCCAGATCATCTCCAGAGGGCGTTTGGAATCACTG
CTCATTGAAAAAGGAGGGAGAGTGACATCAGCTGTGTCAGGCAAGACTGATTACTTAATA
GTGGGTTATAAATTAGAGGATGGCAGAGAAGTGTCTCAGGGCAGTAAATTCGTGAAAGCA
ACTTAACTAGGAAAGACCATCCTTACTGAAAGTCAACTAGAGGAGTTTATTAAGGAGAAA
TCAGGGGATCAGAGTTTCACTATTTCCATGAGACCTGGACTTTCAATAGCTGCAAGTGCT
GATGCCAAAATGACTGATGAACAGGCGCTTAAAGCATCAGTTGAGAAGAAGAGAGAAAGT
TTGGCTCAGGATAATTAATCTATGGTTGGTAAGGAAATGTGGACTGATCTATATGCTCCT
CAATCAGTGAGAGACTTAGTTGGAAACCAAGGTGTAATTGATCAGCTATACGAATGGCTC
AAAGATTGGGATGATGTCCATGTCAGAGGAAACAAAAAGCAAGTTCATCCACGCAGAGGC
CAAAGTTGGTAAGATTTGCCAAAAGTCAATGCCACTGCAGTTCTTCTGAGTGGACCACCA
GGCATTGGAAAAACAAGCAGTGCTAGGATTGTGTGCAAACAACTTGGGTTTGAAGTGCTT
GAGACAAATGCCAGTGATACAAGAAACAAGAATTCAATTAACAACATGCTACAAGTTCTG
TCATCAAATAAATCAATAGATTACTTCAGCGTTGCAGGTATAAAGAAGCAGTAAGCCAAC
CCAGTTTCGTCAGACTCAGCTGGCTAGCAAACCAAGAAATCAGTCATTATCATGGATGAA
GTAGATGGAGTAGGTGCTGGTGACAGGGGTGGTCTGTAAGCATTAATTCAAGTGATTAAG
TTAACAAAGACTCCAATTATCTGTATATGCAACGATAGGTAAAACCGCAAGTTGCAAAGT
TTGCTAAATTACTGCTATGACTTGAAGTTCAACAGACCAAGCTAAAATGAGATAGCAAAG
AGAGTTTAGTTGATATGCCAATCAGAAGGTCTTTAAATTGACAATAATACCATTAATAAG
ATTATAGAAAGTTCAGGCTCTGACATCAGACAAATTGTTAATATTTTGCAGATGTGGAAA
AATTAGCAACTTGACACAGGTTTCTTAAAGAACATTTCTAAAGACGAAAATGTAATGATC
AATAACTTTGATGCTGCACATCGCATGCTAAATCATGGAGCTTAGAGTTTAGACATTAAA
TATCCTTAATTTAGGTAGAAAATGGACTTGTTCTTTATTGACTATGATTTGATTCCACTT
TTGATTCAAGAAAATTACTTAAACTCTATGGGAGATAGAAATAAACTTGAGGATATAGAA
CGTATGGCTTCTGCTGCTGAGTTTATTTCGCTTGGTGATAGTATCTCAAACTAAGTTCGC
AAGAATTAGGATTGGTCACTTCTACCTAATATGGGTATTTGCTCTGCTATAGCTCCATGT
TTACTCGTGAATGGTTCAACATTTTATCCTAGATTCCCTGAATGGTTGGGTAAAAATTCT
TCTCAACGCAAAGCCAAGCGTTTAATTCGTGAATTGAAGAAAGTCATGGGTCATCATGCT
CAGGCTGATAGAATGGAAATTTAGAATGAGTACACACAACTTATTCTTTCTTACTTGTAC
AAGTTCCTTAAGAAGCATGAGAAAACTGGGGATAAGGAAAATCTACACGAGTTACTAGAA
TTTATGAAAGATTTGGGACTCACTATGGAACATTTTAAGGAACATTTGATTTCTCTATGT
ATGGATAAGAAAACTTGTGAAGGATTTGATAGTCTAGCTTCCACTACTAAAGCAGCTTTT
ACAAAGATGTTTAATCAGGAAAATAAAGATAATCTAGTTGGCAAAAAAGGAAAGAAAGCT
CCAGCTGGTAAAAAAGGTGGTGCTTCACCTGCTGCCACAGCTGCCGATGACAACGGTGAG
GCTTCTGATGTAGAAGAGGAAGCAGAAGAAGAAGTTGGACAACTCATAGATGAAGATCAG
GCTCTAGAACTTAAAAAGGGCAAACAACTAGAGAAAGAAATGGAAAAGAAGAATAAAAAG
GCAAAAGTAGAGAAGTTTGAATTAGTTCAAATCAAAGGAGGAGCTCCAGCTGGTGGTAAA
GCAAAGAAGGGTGCTAAGAAAGGGGCAAAAACCACTGCAAAAGCTGCTGGCAAGAAAGGC
AAGAAGGGAGCAGCCAAAGATGATAGAAGTGAGGAAGAGTACATCAGCGATGATAGTCTC
AATGAGTTTGTTGTCGATGATGATGAAATTGAGTATGACAAAAAGGGTAAAAAGGGTGGT
GCTAAGAGTGCTGGGGCCAGAGGTAGAGGCAAAAAATGA

>Contig2682.0.g45(protein)
MIRDFFKQTSIKTSDSKGKVVQPSPVASKTQTKSKEPNTRFERSEKREKSKSKQSQATED
KSSQQNQKSAKKELIKSTNSRSKVQSPAKSPMTRTPIKSQPKKEQQTYEDSLEDAEEEEV
KVSTRSAAKNQTLAQNSKAQKSHGDKNTGNSQRSSHKNESNNRNDSQSRSKTPIKNQQQS
NMQVPENKVNTRNSAKATPNKNQIQSQANNMIQKTKHAPPSPAKNSQKSQNVVNQNTQQK
SKQPQDTFADVEMKDEDDNQETISPQIRSSQRNTRQSQSRGASQNTNIRSGQSQNAQNVA
NQNNHKSDVVMKQQVSEDEDEDLGAMMRNRRRGPAAVVEDEDDDQETQIQARNRQSKKRN
TILDDEDEEDVRRTQTNKRQKVTENEEEEKDEKQQQQSKQSQADLYLEKMAYSKSQQQLS
QSSAKQSKNMQASGMSPRLDKLSINDSNAAKSGSRQMPQTMSQKSNGNARKQQKPASQDE
DMDLDLDDLRDAIEDKPLEGLTFVISGEFQIISRGRLESLLIEKGGRVTSAVSGKTDYLI
VGYKLEDGREVSQGSKFVKATQLGKTILTESQLEEFIKEKSGDQSFTISMRPGLSIAASA
DAKMTDEQALKASVEKKRESLAQDNQSMVGKEMWTDLYAPQSVRDLVGNQGVIDQLYEWL
KDWDDVHVRGNKKQVHPRRGQSWQDLPKVNATAVLLSGPPGIGKTSSARIVCKQLGFEVL
ETNASDTRNKNSINNMLQVLSSNKSIDYFSVAGIKKQQANPVSSDSAGQQTKKSVIIMDE
VDGVGAGDRGGLQALIQVIKLTKTPIICICNDRQNRKLQSLLNYCYDLKFNRPSQNEIAK
RVQLICQSEGLQIDNNTINKIIESSGSDIRQIVNILQMWKNQQLDTGFLKNISKDENVMI
NNFDAAHRMLNHGAQSLDIKYPQFRQKMDLFFIDYDLIPLLIQENYLNSMGDRNKLEDIE
RMASAAEFISLGDSISNQVRKNQDWSLLPNMGICSAIAPCLLVNGSTFYPRFPEWLGKNS
SQRKAKRLIRELKKVMGHHAQADRMEIQNEYTQLILSYLYKFLKKHEKTGDKENLHELLE
FMKDLGLTMEHFKEHLISLCMDKKTCEGFDSLASTTKAAFTKMFNQENKDNLVGKKGKKA
PAGKKGGASPAATAADDNGEASDVEEEAEEEVGQLIDEDQALELKKGKQLEKEMEKKNKK
AKVEKFELVQIKGGAPAGGKAKKGAKKGAKTTAKAAGKKGKKGAAKDDRSEEEYISDDSL
NEFVVDDDEIEYDKKGKKGGAKSAGARGRGKK