Identifiers and Description

Gene Model Identifier

Contig17884.0.g118

Standard Name

HMGB1c

Aliases

Contig17884_0_g118

Description

HMG (high mobility group) box

Genome Browser

Genome Browser (Micronucleus)

Micronuclear Genome Browser

Gene Ontology Annotations

Cellular Component

• nucleus (IEA) | GO:0005634

Molecular Function

• protein binding (IEA) | GO:0005515
• ATP binding (IEA) | GO:0005524
• zinc ion binding (IEA) | GO:0008270
• hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (IEA) | GO:0016818
• DNA binding (IEA) | GO:0003677

Biological Process

• regulation of transcription, DNA-templated (IEA) | GO:0006355

Domains

• ( pfam00505 ) HMG (high mobility group) box
• ( pfam09011 ) Domain of unknown function (DUF1898)
• ( pfam08073 ) CHDNT (NUC034) domain
• ( pfam06382 ) Protein of unknown function (DUF1074)

Gene Expression Profile

Homologs

Source	Identifier	Score	Description
SGD	YKL032C	0.0000000000599805963605737	IXR1 SGDID:S000001515, Chr XI from 381858-380065, Genom...
T. thermophila	TTHERM_00446570	0.000000100009565553302	hypothetical protein

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>Contig17884.0.g118(coding)
ATGCGTCAACTTCAAAATCACAATTCAGCTGGATTGCCAAAATTGCAACAACAAAGCTGC
CTTAAATCCGGAAACCAATTTTCATCAAACTAAAATGAGGTACGAGACATACACGGGATG
CTTCTCAGAAGATAGAATTCAACCATGTCAGAAAGAAAGAGAGAAGTGAAGCATCATAGA
AAAGCTTCTTATTTCACAAAAGTTCAAAAAAAACAGGAAGGCCTTTTATCGGAAGACGAT
AATATCAGCAGCTTTAATGTTTACGGGGACGAACAAGCCATTATTTCATTCGATCCGTTA
CTAGATCCTCAACCAAACGAGTATATGCACTCTAGTATCATGACTGAAGAGAGACTCATC
CTCGATGATGATTACATGCTTGATATAACTCAAGACCTTCCCATTAGAAAACCTCAATCG
GCCTATGTGATATTTGGAAAAATGAAAAGAGACTTAATAATGCGGTAGAACCCTGGCATA
AAAGTTACTGAAGTCGTCAAACAGATCGCCAAGCTATGGCAGGCCCTTTCAAAAGAGGAA
AAATTGAGATATAAGGACAGAGCAAAGCAAGGTAAATTTGAATTTTATGATGTCTCATCT
TAAAATATTATAGATAAGGAAAGGTATATTTAGGAATTGAGAGAGCTCACAAAGAGCAAT
AAAAATCTCGAAAAACCAAAGAAACCCCTCACTCCCTACATGCTTTTTGTTAGAGAGACG
AGACCTAAAGTTGTTCGAGAAAACCCAAATATTGCATCCCTTGATATTATGAAGGAAGTT
GGAAGAATATGGTAGAACATTACCAAAGATGAGCTCCAATATTTCAAAATTAAATCTGAC
TCAGATATGGAGAGGTACAAGAAGGAGCACTAAAAGTTTATTTAGGATATAAATGATCTT
CGGGCTCTATCTACAAAGGAGAAGAACGATTTGAAATTACAAACTGGAGACAACCGATTG
TTGTCAGACAGGGTGCCTTAAATCAAACCCTAACAATGCGACGAAAATTAGTTATCAGGA
ATCAAACAGTTTAATGTTCAAGAGAAAAGAAGAAAGATAGATTAAGTGAACAATATGCAA
ACTCCAGAACCGCTAATTAAAGGAACGCCGTTGAAATAAGATAAAAATTACGCTCATTAT
GCACAGGATACTCCATCAACCAACAATGATGAACCTGTAAGCCCTTACATGCGAGCGAAA
CGTGAGGTATCCCGCCCAAAGAAGCCTCTCTCTGCTTATATTTACTTTAGTTAGGAGTTT
AGAGAAAAATTGAAGGAGCAACACCCAGAGTGGTCCTCTAACGAAATCATGAGGCATGTA
AGCAATAAATGGTAGCATATGGACAGACAATAAAAAGATCCCTACAATCAAATGGCTGCT
CTCGATAAGTCAAGATACGATAAACAGCTTTTAGAGTTCACATAAATGGCAGAAGCTCCT
GGAGAGCACATTTTTGACTTCAGAAAGCCAAGGAGATCATTTGATAATAGCGAGAGTCAG
AGTCACTCACATCACAATTTAAACATTTCTGATATGAAATGCTAAGAATATAAACCTAGA
AACTCTGCCACCAAAGATACAAATCCATCACAACACGGTGAGTATTTGAATGCTTACTAA
CACGATGAAAAGTTCCCTATACCTCAGAGAAGTCCAATGAGAGGTCAAGATGACTCGAAC
ATCCCTTTTACTCCCTTCAATAACGCTGCTACTGTTGGATCCTCAAATTATTACAACATG
GAACCACCTTCCTCAATTTAAAATTAAGCTTACTAAACACAAAATGCGGGATCAGGTATG
AATCAGGGTGCTCTAAATTATCAGCAACCTGGTTATATGAATTAGTCTCCGATGGTAAGA
CCTCTCTACCCTGACTTTAACATGTCGCAGAGCAACACGAAGTTCCTTTGTGAGGATGGG
CAGATGGATTTCCAAAATACGAACTACGACAGCTTCAACTAGCAGCTGCTTTTACCTAGC
TTCTATAACTTTGACGAACAAAGTTTCTTCAAAAATCTTGATTCTTTCACTCAGAGAGCT
TCTAGCAACTAGGTACAAAGTGAAAACTATTTGAATGAAAAGAAAGATATTTTTGACTCC
TACGGGATGCGAGATTAGCAAGGCTTTAACTGA

>Contig17884.0.g118(protein)
MRQLQNHNSAGLPKLQQQSCLKSGNQFSSNQNEVRDIHGMLLRRQNSTMSERKREVKHHR
KASYFTKVQKKQEGLLSEDDNISSFNVYGDEQAIISFDPLLDPQPNEYMHSSIMTEERLI
LDDDYMLDITQDLPIRKPQSAYVIFGKMKRDLIMRQNPGIKVTEVVKQIAKLWQALSKEE
KLRYKDRAKQGKFEFYDVSSQNIIDKERYIQELRELTKSNKNLEKPKKPLTPYMLFVRET
RPKVVRENPNIASLDIMKEVGRIWQNITKDELQYFKIKSDSDMERYKKEHQKFIQDINDL
RALSTKEKNDLKLQTGDNRLLSDRVPQIKPQQCDENQLSGIKQFNVQEKRRKIDQVNNMQ
TPEPLIKGTPLKQDKNYAHYAQDTPSTNNDEPVSPYMRAKREVSRPKKPLSAYIYFSQEF
REKLKEQHPEWSSNEIMRHVSNKWQHMDRQQKDPYNQMAALDKSRYDKQLLEFTQMAEAP
GEHIFDFRKPRRSFDNSESQSHSHHNLNISDMKCQEYKPRNSATKDTNPSQHGEYLNAYQ
HDEKFPIPQRSPMRGQDDSNIPFTPFNNAATVGSSNYYNMEPPSSIQNQAYQTQNAGSGM
NQGALNYQQPGYMNQSPMVRPLYPDFNMSQSNTKFLCEDGQMDFQNTNYDSFNQQLLLPS
FYNFDEQSFFKNLDSFTQRASSNQVQSENYLNEKKDIFDSYGMRDQQGFN